OK starting from Ocarina of Time.
Link went to the Temple of Time to get the Master Sword but he was to young to be a hero so he was put to sleep for 7 years. When he awoke Ganon had brought Darkness to Hyrule using his Triforce of Power. But using the power of the 6 Sages He sealed away Ganon into the Sacred Realm. Never to be seen again. Link then earned the title of Hero of Time
Wind Waker
100 years later Ganon somehow broke free of the Sacred Realm. With his wrath and the Triforce of Power He sunk Hyrule to the Bottom of the Great Sea. The then used Forsaken Fortress as a base to kidnap little girls with Yellow Hair and pointy ears useing a giant bird. He did this in search of Princess Zelda who held the Triforce of Wisdom.
On an Island in the Great Sea a boys named Links sister got mistook for a pirate and was kidnapped by the giant bird. So he set off to Forsaken Fortress to rescue her but was captured and threw out to sea.He then met a mysterious boat called the king of red lions who instructed Link to find three orbs. Once the orbs were found and placed Link traveled under the sea to find Hyrule. He then took the master Sword and brought it back to power with the help of two sages. Then the pirate who is actully Zelda gets kidnapped by Ganon. Then Link climbs Ganons Tower to face him. Resulting in Ganon and Hyrule to be sent to the bottom of the sea forever. (or not...)
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