From the abondoned factory, go north to an opened gate(Eva opened it during the cut-scene after you defeat the ocelots). You end up in a new area. Keep going north, you then come to a swamp. Go past the swamp to a new area with electric fences. Make your way past the guards and fences, then go north. The next area is an enemy outpost/base (the helicopter is here). Go through the base (north)to the next area(ocelot boss fight). I'm thinking about this from memory, so look for different walkthroughs on this site. Hope I helped!